Wrabl, James O: search on Z-Library

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1

Structural and Energetic Basis of Allostery

Hilser, Vincent J., Wrabl, James O., Motlagh, Hesam N.

Journal:

Annual Review of Biophysics

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

2

Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment

James O. Wrabl, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 359 KB

english, 2004

3

The ensemble nature of allostery

Motlagh, Hesam N., Wrabl, James O., Li, Jing, Hilser, Vincent J.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

4

Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor

Li, Jing, White, Jordan T, Saavedra, Harry, Wrabl, James O, Motlagh, Hesam N, Liu, Kaixian, Sowers, James, Schroer, Trina A, Thompson, E Brad, Hilser, Vincent J

Journal:

Year:

2017

Language:

english

File:

PDF, 3.17 MB

english, 2017

5

Experimental Characterization of “Metamorphic” Proteins Predicted from an Ensemble-Based Thermodynamic Description

Wrabl, James O., Russo, Miranda, Hoffmann, Jordan, Sheetz, Keila, Munoz, Andrew, Hilser, Vincent J.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 57 KB

english, 2019

6

Phosphorylation Sites with S/T-P Motif: Possible Basal Anti-Aggregation Mechanism

Hyung Cho, Min, Wrabl, James, Hilser, Vincent, Taylor, James

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 43 KB

english, 2019

7

Networked communication between polymerase and exonuclease active sites in human mitochondrial DNA polymerase

Sowers, Mark L., Anderson, Andrew P P, Wrabl, James O, Yin, Y. Whitney

Journal:

Journal of the American Chemical Society

Year:

2019

Language:

english

File:

PDF, 1015 KB

english, 2019

8

Thermal unfolding equilibria in homodimeric chicken gizzard tropomyosin coiled coils

James Wrabl, Marilyn Emerson Holtzer, Alfred Holtzer

Journal:

Year:

1994

Language:

english

File:

PDF, 838 KB

english, 1994

9

Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization

James O. Wrabl, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 246 KB

english, 2005

10

10.1038/12338

Shortle, David, Wrabl, James

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 993 KB

english, 1999

11

Statistics of Random Protein Superpositions: p -Values for Pairwise Structure Alignment

Wrabl, James O., Grishin, Nick V.

Journal:

Journal of Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.18 MB

english, 2008

12

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

Cho, Min-Hyung, Wrabl, James O., Taylor, James, Hilser, Vincent J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.04 MB

2020

13

Protein folding for realists: A timeless phenomenon

David Shortle, Yi Wang, Joel R. Gillespie, James O. Wrabl

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 3.88 MB

english, 1996

14

The role of protein conformational fluctuations in allostery, function, and evolution

James O. Wrabl, Jenny Gu, Tong Liu, Travis P. Schrank, Steven T. Whitten, Vincent J. Hilser

Journal:

Biophysical Chemistry

Year:

2011

Language:

english

File:

PDF, 2.20 MB

english, 2011

15

Intrinsically Disordered Protein: A Thermodynamic Perspective

Li, Jing, Wrabl, James O., Hilser, Vincent J.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 36 KB

english, 2015

16

A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy

Hadzipasic, Omar, Wrabl, James O., Hilser, Vincent J., Fetrow, Jacquelyn S.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 3.58 MB

english, 2013

17

CASP5 assessment of fold recognition target predictions

Lisa N. Kinch, James O. Wrabl, S. Sri Krishna, Indraneel Majumdar, Ruslan I. Sadreyev, Yuan Qi, Jimin Pei, Hua Cheng, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.04 MB

english, 2003

18

Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: Molecular dynamics simulations of native and denatured staphylococcal nuclease

James O. Wrabl, David Shortle, Thomas B. Woolf

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 316 KB

english, 2000

19

An Energetic Representation of Protein Architecture that is Independent of Primary and Secondary Structure

Wrabl, James O., Vertrees, Jason, Hilser, Vincent J.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

20

Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor

White, Jordan T., Li, Jing, Grasso, Emily, Wrabl, James O., Hilser, Vincent J.

Journal:

Philosophical Transactions Biological Sciences

Year:

2018

Language:

english

File:

PDF, 893 KB

english, 2018

21

Phosphorylation Sites with S/T-P Motif: Possible Basal Anti-Aggregation Mechanism

Hyung Cho, Min, Wrabl, James, Hilser, Vincent, Taylor, James

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 43 KB

2019

22

An Energetic Representation of Protein Architecture that Is Independent of Primary and Secondary Structure

Vertrees, Jason, Wrabl, James O., Hilser, Vincent J.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 945 KB

english, 2009

23

Investigating Homology between Proteins using Energetic Profiles

Wrabl, James O., Hilser, Vincent J., Pande, Vijay S.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.96 MB

english, 2010

24

The role of negative selection in protein evolution revealed through the energetics of the native state ensemble

Hoffmann, Jordan, Wrabl, James O., Hilser, Vincent J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.00 MB

english, 2016

25

The Effects of Prolonged Stimulus Repetition with Repeated Switching of Target Status on the Orienting Response in Schizophrenia and Depression

BEKNSTEIN, ALVIN S., EIEDEL, JAMES A., GRAAE, FLEMMING, SEIDMAN, DANIEL, STEELE, HOWARD, LUBOWSKY, JACK, YEAGER, ANNE, WRABLE, JAMES, MARGOLIS, REUBEN

Journal:

Journal of Nervous & Mental Disease

Year:

1990

File:

PDF, 182 KB

1990

26

Thermodynamic environments in proteins: Fundamental determinants of fold specificity

James O. Wrabl, Scott A. Larson, Vincent J. Hilser

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 289 KB

english, 2002

27

Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins

John O. Wooll, James O. Wrabl, Vincent J. Hilser

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 313 KB

english, 2000

28

Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily

James O. Wrabl, Nick V. Grishin

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 726 KB

english, 2001

29

Towards the Design of Metamorphic Proteins using Ensemble-Based Energetic Information

Hoffmann, Jordan, Wrabl, James O., Hilser, Vincent J.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 34 KB

english, 2013

30

Notes, Short Comments, and Answers to Correspondents.

Hoffmann, Jordan, Wrabl, James O., Hilser, Vincent J.

Journal:

Year:

1922

Language:

english

File:

PDF, 892 KB

english, 1922

31

The role of negative selection in protein evolution revealed through the energetics of the native sate ensemble

Hoffmann, Jordan, Wrabl, James O., Hilser, Vincent J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2018

File:

PDF, 106 KB

2018

32

Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition

James O. Wrabl, Scott A. Larson, Vincent J. Hilser

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 598 KB

english, 2001

33

Dynamic allostery can drive cold adaptation in enzymes

Saavedra, Harry G., Wrabl, James O., Anderson, Jeremy A., Li, Jing, Hilser, Vincent J.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.39 MB

english, 2018

34

Perturbations of the denatured state ensemble: Modeling their effects on protein stability and folding kinetics

James O. Wrabl, David Shortle

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 3.52 MB

english, 1996

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